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Plant Biology

Wiley

Preprints posted in the last 30 days, ranked by how well they match Plant Biology's content profile, based on 15 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

1
Domesticated pennycress is a self-pollinated crop

Lavaire, T.; McLaughlin, D.; Liu, S.; Kennedy, R.; Sauer, T.; Chopra, R.; Cook, K.

2026-04-10 plant biology 10.64898/2026.04.08.716402 medRxiv
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CoverCress is a new winter annual oilseed crop developed from field pennycress within the past 20 years. Field pennycress is commonly considered to be self-pollinated but little basic research has been published and there is some misalignment of conclusions. Our experience working with pennycress plant growth in greenhouse and field conditions over the past 13 years suggests that outcrossing is uncommon. We conducted lab, greenhouse, and field experiments to strengthen the body of work. Pollen viability kinetics analysis showed that longevity of pollen viability is negatively impacted by increasing temperatures and by direct exposure to light. Samples treated at 4C declined to 50% viability in 12 hours while it took just 2.5 hrs at 37C, and 1.6 hrs in full sunlight on a cool early April day. Cross-pollination was absent among greenhouse-grown plants flowering inside an agitated plastic pollen-containment covering. Across greenhouse tests, high rates of cross-pollination occurred only in an emasculation treatment that rendered flowers male sterile and opened the pistil to cross-fertilization. Field trials designed to measure pollen flow distance using a trackable fae1 knockout reporter gene failed to show detectable movement of pollen under field conditions in two locations. This data strongly suggests that domesticated field pennycress may be considered a self-pollinated crop and managed as such.

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Interspecific adaptations in root system architecture define host tolerance of Arabidopsis to biotic stresses by root feeding nematodes

Willig, J.-J.; van Schaik, C.; Faesen, R.; Suresh, S.; Sterken, M. G.; Teklu, M. G.; Smant, G.

2026-04-10 plant biology 10.64898/2026.04.08.717173 medRxiv
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Belowground, plants are exposed to a wide range of biotic stresses that vary in severity and nature, including tissue damage, disruption of vascular connectivity, and depletion of assimilates. How plants adapt their root systems to cope with different types of belowground biotic stresses is not well known. In this paper we compare above- and belowground plant adaptations to three nematode species with distinct tissue migration and feeding behaviours to study mechanisms underlying tolerance to different types of biotic stresses. We monitored both green canopy growth and changes in root system architecture of Arabidopsis inoculated with Pratylenchus penetrans, Heterodera schachtii, and Meloidogyne incognita. This revealed three distinct phases in aboveground plant responses: (i) initial growth inhibition associated with host invasion and tissue damage, (ii) persistent growth reduction associated with nematode sedentarism, and (iii) late growth stimulus in more advanced stages of infection. Specific adaptations in the root systems further revealed fundamentally different stress coping strategies. Tissue damage and intermittent feeding by P. penetrans in the root cortex did not induce significant changes in root system architecture. Tissue damage to the root cortex and prolonged feeding on host vascular cells by H. schachtii induced secondary root formation compensating for primary root growth inhibition. Prolonged feeding on host vascular cell by M. incognita alone did not induce secondary root formation, but was accompanied by typical local tissue swelling instead. Our data suggest that local secondary root formation and tissue swelling are two distinct compensatory mechanisms underlying tolerance to sedentarism by root-feeding nematodes. HighlightHow plants utilize root system plasticity to cope with different types of biotic stresses by root feeding nematodes remains largely unknown. Here, we report on specific adaptive growth responses in Arabidopsis roots to three nematode species, Pratylenchus penetrans, Heterodera schachtii, and Meloidogyne incognita, with fundamentally different strategies for host invasion, subsequent migration through host tissue, and feeding on host cells.

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Herbarium-based measurements are reliable predictors of fresh plant traits in Neotropical Myrtaceae

Kilsztajn, Y.; Conceicao, L. H. S. d. M.; Proenca, C. E. B.; Vasconcelos, T. N. d. C.; Staggemeier, V. G.

2026-03-30 plant biology 10.64898/2026.03.26.714626 medRxiv
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PremiseHerbarium specimens are increasingly used to extract morphological traits for ecological and evolutionary studies, yet the effects of tissue desiccation on trait measurements remain poorly understood. Here, we tested whether higher tissue water content leads to greater measurement changes after herborization (H1) and whether fresh trait values can be reliably predicted from herbarium measurements (H2). MethodsWe evaluated the reliability of herbarium-based measurements by comparing fresh and dried traits of leaves, flowers, fleshy fruits, and seeds across 262 individuals representing 133 Neotropical Myrtaceae species. Phylogenetic least square models and machine-learning regressions were used to test H1 and H2. ResultsLeaves and flowers generally shrank after herborization, fruits size metrics tended to increase, and seeds were largely unaffected. Water content was significantly associated with the magnitude of herborization effects in flowers and some leaf and seed traits. Fresh trait values were accurately predicted from herbarium measurements. Prediction errors were lowest for leaf traits, followed by fruits, flowers, and seeds. DiscussionThese results partially support H1 and support H2, indicating that herbarium specimens can be reliably used for trait analyses when organ-specific responses are considered, providing a practical framework to account for potential desiccation bias in functional trait research.

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Common, species-specific, and accession-specific responses of foliar phytohormones and morphological traits to drought and herbivory

Xiao, X.; Aragam, K. S.; Braeutigam, A.; Dussarrat, T.; Gaar, S.; Hanusch, M.; Heinen, R.; Hildebrandt, M.; Jakobs, R.; Junker, R. R.; Keshan, R.; Mendoza Servin, J. V.; Setordjie, E.; Seymen, Y.; Steppuhn, A.; Unsicker, S. B.; van Dam, N. M.; Weber, B.; Weirauch, S. K.; Weisser, W.; Ziaja, D.; Schnitzler, J.-P.; Winkler, J. B.; Mueller, C.

2026-04-01 ecology 10.64898/2026.03.30.715323 medRxiv
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BackgroundPlants are exposed to various environmental challenges. With ongoing climate change, droughts and insect outbreaks are expected to become more frequent. Thus, a better understanding is needed of how different plant species respond to such single and combined challenges. This study investigated common versus species-specific responses to environmental challenges in three perennial plant species of different growth forms and whether responses differ intraspecifically among accessions. Clones of different accessions of the herbaceous species Tanacetum vulgare, the woody vine Solanum dulcamara, and the tree Populus nigra were subjected to similar control, herbivory, drought, and combined (drought and herbivory) treatments for the same periods. After the exposure, concentrations of foliar phytohormones and various morphological traits were measured. ResultsAcross all species, several foliar phytohormones and one of ten morphological traits responded consistently to the environmental challenges. Jasmonoyl-isoleucine was induced by herbivory and the combined treatment, abscisic acid (ABA) by drought and the combined treatment, and indole acetic acid by the combined treatment in all species. Root mass remained unchanged in all species. However, structural equation models (SEMs) revealed a shared regulatory pathway across species in which ABA connected treatment and root mass, indicating a common hormonal response potentially linking challenges to growth responses. Despite these common patterns, species-specific responses were pronounced. In P. nigra, a unique induction of salicylic acid was found under the combined treatment, while aboveground mass and root-shoot ratio remained unaffected by any treatment, in contrast to the other two species. Species-specific SEMs further indicated distinct phytohormone-mediated pathways underlying morphological variation. Phenotypic plasticity reflected these species-specific patterns, with none of the phytohormones or morphological traits exhibiting uniform plasticity across species. Intraspecific variation further shaped responses, as phytohormone and morphological trait plasticity depended on accession, indicating substantial accession-specific plant responses. ConclusionsOur results indicate that some responses to comparable challenges may be conserved across species, while others are species-specific. The combined treatment elicited the most pronounced responses, and such complex responses may become more frequent under current global change. Our study highlights that comprehensive understanding of plant responses requires systematic comparisons at both interspecific and intraspecific scales.

5
Lack of evidence for anthocyanins contributing to pigmentation of Chenopodium quinoa

Lingemann, L. T.; Biley, D.; Horz, J. M.; Khatun, N.; Pucker, B.

2026-04-10 plant biology 10.64898/2026.04.07.717023 medRxiv
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While most plant lineages are pigmented by anthocyanins, several families in the Caryophyllales represent a major exception by showing a replacement of anthocyanin pigmentation by betalain pigmentation. The mutual exclusion of anthocyanins and betalains at the family level has been well established for over 50 years and has been mechanistically explained. Chenopodiaceae are a betalain-pigmented lineage lacking a key anthocyanin biosynthesis gene and lacking the key activating transcription factor of the anthocyanin biosynthesis. A publication by Zhang et al., 2024 claims that anthocyanins would be responsible for the red pigmentation in leaves of Chenopodium quinoa. Here, we assessed this study and reanalyzed the RNA-seq datasets generated in this study to demonstrate that there is no evidence for anthocyanin biosynthesis, but activity of the betalain and carotenoid biosynthesis could explain the observed pigmentation of quinoa leaves.

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Screening antifungal activity of macroalgae from SE Spain highlights the invader Rugulopteryx okamurae

Valverde-Urrea, M.; Otero, C. K.; Terradas-Fernandez, M.; Lopez-Moya, F.

2026-04-09 ecology 10.64898/2026.04.07.716908 medRxiv
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The Mediterranean Sea harbors a rich diversity of macroalgae with pharmacological potential. In this study, metabolite composition, antioxidant and antifungal activities of methanol and ethyl acetate extracts from Rugulopteryx okamurae, Dictyota fasciola, Batophora sp., Codium fragile, and Palisada tenerrima from the southeastern coast of Spain were evaluated. R. okamurae, Batophora sp. and C. fragile are non-native. All extracts exhibited antioxidant activity, particularly those obtained with methanol. R. okamurae and Batophora sp. showed the highest activity, inhibiting the DPPH{middle dot}radical by more than 40% at 1 mg/ml. All extracts contained phenolics and flavonoids, which may contribute to the observed antioxidant activity. Moreover, the methanolic extracts of R. okamurae and P. tenerrima exhibited in vitro fungistatic activity against the wilt pathogen Fusarium oxysporum f. sp. cubense tropical race 4. R. okamurae extracts showed the strongest antifungal activity against F. oxysporum f. sp. cubense TR4, with inhibition values of 23.3% and 30.5% at doses of 10 and 20 mg/well, respectively. The methanolic P. tenerrima also showed notable activity (19.8% and 20.7% inhibition), whereas other extracts displayed lower effect. LC-MS/MS analysis of R. okamurae extract revealed a diverse metabolite profile including oxylipin-type metabolites, terpenoid-like compounds and carotenoids. Our findings highlight coastal macroalgae from SE Spain as sources of bioactive compounds and support the valorization of biomass from invaders such as R. okamurae.

7
Genome sequence of Tacca chantrieri reveals the genetic basis of floral pigmentation

de Oliveira, J. A. V. S.; Pucker, B.

2026-03-19 plant biology 10.64898/2026.03.17.712415 medRxiv
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Tacca chantrieri, black bat flower, has showy flowers often appearing almost black. Here, we present the genome sequence and corresponding annotation to identify the genetic basis of the pigmentation. Candidate genes associated with the anthocyanin biosynthesis were identified based on this genome sequence and investigated with respect to their properties. The best dihydroflavonol 4-reductase (DFR) candidate, which harbours all amino acid residues believed to be required for DFR activity, shows a threonine in the substrate preference determining position where most characterized DFRs display asparagine or aspartate. This amino acid residue appears to be frequent in the Dioscoreaceae family as a comprehensive investigation revealed.

8
Comparative analysis of root morphology in several spinach (Spinacia oleracea) varieties: Field vs Hydroponic growth systems

Camli-Saunders, D.; Russell, A. K.; Villouta, C.

2026-04-10 plant biology 10.64898/2026.04.07.717006 medRxiv
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Spinach (Spinacia oleraceae) is a principal vegetable crop commercially grown in Controlled Environment Agriculture (CEA). Recent research suggests that root morphological and architectural differences among crop species influence yield, resource use efficiency, and environmental stress tolerance. These root traits may be exploited to increase yield, promote efficient nutrient use, and mitigate environmental stressors. This study measured differences between various spinach cultivars in CEA systems to reveal morphological and anatomical variation. We grew three spinach cultivars with different reported growing rates ( Income, Darkside, and El-Majestic) under NFT hydroponic and substrate-based systems in a controlled greenhouse environment over 45 days with destructive harvests at days 15, 30, and 45. Supplemental light (250 {micro}mol/m2/s) with 12-hour photoperiod and periodic fertigation was used. Harvests included the collection of leaf and root biomass, and scanning of root systems in WinRhizo software, measuring ten variables. On day 45, root cross-sections from orders 1-5 were embedded in JB-4 resin, sectioned, stained, and analyzed for diameter, vasculature, and rhizodermis characteristics. Results indicate that in spinach, differences in root system morphology are linked to cultivation systems over cultivar identity. Vascular and root anatomical alterations are minor compared to morphological differences in response to the cultivation system. Hydroponic-style growth systems are associated with the proliferation of fine-root ideotypes compared with substrate-based conditions. Such findings affirm previous studies, which suggest plastic root morphology in response to growth systems, and may be used to help create more resilient, resource-efficient cultivars. HighlightsO_LIIn spinach, root system morphology differences are linked to cultivation systems. C_LIO_LIRoot vascular and anatomical alterations are minor in response to cultivation system. C_LIO_LIHydroponic growth systems are linked to fine-root ideotype proliferation in spinach. C_LIO_LIFine-root ideotype proliferation may be a breeding target for CEA spinach. C_LI

9
Vertical Variation of the Caterpillar Community in Oak (Quercus robur) Canopies

Morley, L. M.; Cole, E. F.; Crofts, S. J.; Sheldon, B. C.

2026-04-10 ecology 10.64898/2026.04.07.717053 medRxiv
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1) BackgroundUnderstanding how caterpillar communities vary within tree canopies is key to interpreting forest trophic dynamics and responses to environmental change, yet such variation remains poorly quantified due to the challenges of sampling in three dimensions. 2) AimsWe quantified within-canopy heterogeneity in caterpillar densities, diversity, and herbivory and explored relationships with host tree phenology and commonly used ground-based monitoring approaches. 3) MethodsUsing direct canopy access, we sampled branches from lower, middle, and upper canopy strata of 34 mature pedunculate oaks (Quercus robur) in Wytham Woods, UK, during the spring abundance peak over three consecutive years (2023-2025). We tested for vertical stratification in caterpillar community metrics, examined patterns in early instar distributions at emergence, assessed associations with host tree phenology across spatiotemporal scales, and evaluated how well ground-based methods (water and frass traps) reflect canopy communities. 4) ResultsVertical stratification was modest but varied among years: densities and species richness increased with canopy height in 2023, decreased in 2024, and were uniformly low across strata in 2025. Although within-crown budburst timing varied systematically, with upper branches bursting approximately two days earlier than lower branches, tree phenology did not explain within- or between-year variation in caterpillar communities. Frass trap data correlated moderately well with canopy caterpillar densities, whereas water traps showed weaker and less consistent relationships, reflecting behavioural and methodological biases. 5) ConclusionsCaterpillar communities showed no consistent patterns of vertical stratification across years, instead they are shaped more strongly by inter-annual and tree-level variation. Integrating targeted canopy sampling with scalable ground-based proxies could greatly improve monitoring of arboreal Lepidoptera and inform studies of trophic synchrony and wood-land resilience under environmental change.

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Quantification of anatomical changes in young grapevine wood over time and in response to Neofusicoccum parvum with image processing

Perrin, C.; Courbot, J.-B.; Leva, Y.; Pierron, R.

2026-03-23 plant biology 10.64898/2026.03.20.713180 medRxiv
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Grapevine Trunk diseases (GTDs) represent a major threat for the wine industry. Despite several break-through, their etiology remains unclear and no curative treatment is currently available. Wood anatomy and water transport contribute to the symptoms of young plant decline. This study investigates wood anatomical alterations in two Alsatian grapevine cultivars presenting different susceptibility to GTDs, focusing on wood structure over six months of vegetative growth and in response to infection. Using a validated FasGa staining protocol, wood sections from transverse, tangential, and radial directions were stained to differentiate lignified and cellulosic tissues. Microscopic analysis was performed at x4, x10, and x40 magnifications, yielding a dataset of 4771 images. To support this high-throughput quantitative analysis of microscopy images, a computational model was developed, enabling reliable and efficient assessment of anatomical traits. Pre-established woody tissues presented higher xylem vessels diameter in Gewurztraminer than Riesling, with a dorsoventral arrangement whereas the number of vessels remained the same all over the cross section. No significant anatomical changes were observed in established woody tissues, whereas newly formed xylem anatomy showed a possible rearrangement during infection, especially in Gewurztraminer cultivar. Furthermore, colorimetric analysis quantified the lignification of woody tissues in response to wounding damage compared to un-treated plants. While definitive conclusions remain limited due to the experimental timeframe and sample variability, the findings highlight the need for longer-term studies and broader cultivar evaluation. Code and microscopy images have been made publicly available, providing a scalable digital tool for future research in plant vascular systems.

11
Failure to invest below-ground may limit the Northern expansion of invasive knotweed: lessons from a two-phase transplant experiment

Karrenberg, S.; Barni, E.; Bossdorf, O.; Danko, H.; Giaccone, E.; Parepa, M.; Richards, C. L.; Sebesta, N.; Irimia, R.-E.

2026-03-20 ecology 10.64898/2026.03.18.712549 medRxiv
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The ecological and evolutionary processes determining species range limits remain poorly understood. Ultimately, range limits depend on the species abilities to persist under heterogeneous conditions, by adaptive differentiation and phenotypic plasticity, including transgenerational effects. To investigate ecological differentiation and transgenerational effects in the clonal invasive knotweed, Reynoutria japonica, in Europe, we conducted a two-phase transplant experiment: plants sampled along the entire latitudinal gradient were planted in three sites located at the northern range margin, mid-range and near the southern range margin, and then re-transplanted among all three sites after two years. Biomass production and allocation were generally not associated with latitude of origin and previous growth at the same site did not promote performance. We therefore find no evidence that adaptive differentiation or transgenerational effects contribute to the wide distribution of R. japonica in Europe. However, at the northern site, with a 25% shorter season, knotweed plants invested much less biomass below-ground, and the pattern was further strengthened in plants that had grown in the northern site in the previous generation. Overwintering below-ground rhizomes are essential for survival and spread. We further explored limiting climate conditions in a species distribution model for the European range and found that mean annual temperature and temperature annual range are the main predictors of the European distribution of R. japonica. Taken together, our study suggests that low temperatures and associated short seasons may pose a limit to the broad environmental tolerance of R. japonica and restrict its northward spread by reducing below-ground biomass accumulation.

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Genetic variation in early-season leaf photosynthesis in sugar beet and its relationship with Cercospora leaf spot resistance

Murakami, K.; Narihiro, T.; Horikoshi, M.; Matsuhira, H.; Kuroda, Y.

2026-04-06 plant biology 10.64898/2026.04.03.716265 medRxiv
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Improving photosynthesis is a promising approach to enhance sugar beet productivity. However, genetic variation in leaf photosynthesis and its relationship with disease resistance remain underexplored. We evaluated 98 sugar beet genotypes representing different breeding categories, including commercial F1 hybrids, seed-parent lines, and pollinator lines, in Hokkaido, northern Japan. Leaf gas exchange was measured during early growth under field conditions around the infection period of Cercospora leaf spot (CLS). To account for fluctuating irradiance during large-scale phenotyping, we applied a multilevel mixed-effects light-response model to estimate genotype-specific photosynthetic characteristics. Substantial genotypic variations in photosynthetic characteristics were detected. F1 hybrids exhibited higher photosynthetic capacity than breeding lines, whereas differences among breeding categories were unclear due to large within-category variation. Some breeding lines exhibited photosynthetic rates higher than those of hybrids, indicating exploitable genetic resources within the present genetic panel. We did not detect statistically significant trade-off between leaf photosynthesis and CLS resistance among 98 genotypes; in a subset of 19 genotypes analysed in detail, the relationship was even synergistic. Our results highlight the genetic diversity of leaf photosynthesis and its category-dependent structure, and suggest that selection for enhanced photosynthesis can proceed without substantial trade-off with CLS resistance. HighlightLeaf photosynthesis of 98 sugar beet genotypes showed significant genetic variation and dependence on breeding category. Active photosynthesis incurred minimal trade-off with Cercospora leaf spot resistance.

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Division of labor between seed plant RAB GDI paralogs: insights from genetic analysis in Arabidopsis thaliana

Soukupova, H.; Cvrckov, F.; Zarsky, V.; Hala, M.

2026-03-27 plant biology 10.64898/2026.03.25.714218 medRxiv
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BackgroundRAB Guanine Nucleotide Dissociation Inhibitors (RAB GDIs) are important vesicle transport regulators in eukaryotes, participating in the functional cycle of RAB GTPases by stabilizing their non-active GDP-conformation. AimsWe address the importance of the three Arabidopsis thaliana RAB GDI paralogs by genetic and developmental analyses and put these results into the seed plants evolution context. MethodsWe use methods of genetics, microscopy and phylogenetics. ResultsOur genetic analyses of Arabidopsis T-DNA insertional mutants confirm recent CRISPR alleles data indicating lethality of double gdi1 gdi2 mutants, and our microscopic data point to embryo development arrest in double mutant seeds. We also confirm the involvement of GDI2 and GDI3 in pollen tube growth. Moreover, our data show that GDI1 also contributes to proper pollen function. Our phylogenetic analysis reveals independent diversification of RAB GDIs in Gymnosperms and Angiosperms, with early specialization of an Angiosperm reproduction-and gametophyte-related clade. ConclusionsIn Arabidopsis, RAB GDI1 and 2 are important for the vegetative growth while RAB GDI2 and 3 are vital for reproduction. Evolution of the RAB GDI family reflects the evolution of seed plants. HighlightsRAB GDIs are vital for plant growth and reproduction and act redundantly. Even the low-transcribed RAB GDI1 isoform contributes to the proper pollen function. Two RAB GDI clades evolved in early Angiosperms.

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Structure of the Arabidopsis receptor kinase SRF6 ectodomain determined from crystals obtained using the LRR crystallisation screen

Caregnato, A.; Hohmann, U.; Hothorn, M.

2026-03-23 plant biology 10.64898/2026.03.20.713188 medRxiv
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Plant-specific membrane receptor kinases with structurally diverse extracellular domains regulate key processes in plant growth, development, immunity and symbiosis. Structural studies of these glycoproteins are often hampered by the limited quantities in which they can be obtained. Here, we describe the LRR crystallization screen, which has enabled the successful crystallization and structure determination of multiple receptor kinase ectodomains, including ligand-and co-receptor-bound complexes. As an example, we report the 1.5 [A] resolution crystal structure of the leucine-rich repeat (LRR) domain of STRUBBELIG-RECEPTOR FAMILY 6 (SRF6) from Arabidopsis thaliana. The SRF6 ectodomain contains seven LRRs and a disulfide-bond-stabilised N-terminal capping domain but lacks the canonical C-terminal cap and the N-glycosylation pattern typically observed in other family members. Previously reported protein-protein interactions between the SRF6 and SRF7 ectodomains and the receptor kinases BRI1, BRL1, BRL3, SERK3 and BIR1-3 could not be confirmed by quantitative isothermal titration calorimetry and grating-coupled interferometry assays, suggesting that these structurally conserved LRR receptor kinases may have signalling functions outside the brassinosteroid pathway. SynopsisA crystallisation screen that has enabled the structural analysis of various extracellular domains of plant membrane receptor kinases is described together.

15
Traversing the canopy: phenology-driven changes and within-canopy transport shape the phyllosphere microbiome in a temperate floodplain hardwood forest

Sanka Loganathachetti, D.; Michalzik, B.; Sandoval, M. M.; Zerhusen, P.; Richter, R.; Engelmann, R. A.; Kuenne, T.; Wirth, C.; Kuesel, K.; Herrmann, M.

2026-03-27 ecology 10.64898/2026.03.26.714518 medRxiv
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O_LIPhyllosphere microbiomes are subject to microbial import from various sources and undergo substantial changes during phenological changes of plants. However, these processes are still poorly understood for forest canopies. We propose that phenology-driven changes in host properties, and rainwater-mediated, within-canopy transport shape the phyllosphere microbiome in temperate forests. Leaves and throughfall samples were collected from oak, ash and linden trees at top, mid, and bottom canopy positions at the Leipzig canopy crane facility (Germany) at time points representing early, mid and late phenological stages. Bacterial community composition was assessed by 16S rRNA gene amplicon sequencing. C_LIO_LIPhenological stages explained 19% of phyllosphere bacterial community variation, followed by tree species identity (12%) and canopy position (2%). Later phenological stages exhibited more homogeneous and functionally redundant phyllosphere communities along with a strong decline of plant pathogens and increasing potential for microbially mediated biocontrol mechanisms. Throughfall transported up to 1011 bacterial cells per litre with maximum bacterial fluxes at the canopy top. C_LIO_LIOur findings demonstrate that in temperate forests, phenology-driven effects on the phyllosphere microbiome are far more important than tree species specific effects. Extent and selectivity of throughfall-mediated mobilization may play a crucial role for the spatial heterogeneity of microbial communities in tree crowns. C_LI

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Temperature stress resilience in polar Chlamydomonas is regulated by acclimation to light and salinity: implications for survival in a changing world

Osmers, P.; Szenasi, A.; Kostyniuk, L.; Caputo, S.; Bradette, N.; Cvetkovska, M.

2026-04-07 plant biology 10.64898/2026.04.03.716389 medRxiv
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O_LIAquatic algae are key primary producers in the Arctic and Antarctic, yet how cold-water species respond to environmental change is poorly understood. The Polar Regions are increasingly exposed to frequent heat waves, leading to declining ice cover, increased light availability, and decreasing salinity in polar waters. We compared three phylogenetically related but geographically distant polar Chlamydomonas species to test how habitat history shapes algal responses to light, salinity, and temperature stress. C_LIO_LIWe assessed the growth, morphology, and photochemistry of psychrophilic Chlamydomonas acclimated to native-like (lower light, higher salinity) and climate-shifted conditions (higher light, lower salinity). Next, we exposed acclimated cultures to a lethal heat shock and observed how acclimation affects algal temperature stress resilience. C_LIO_LIAll three species acclimated to climate-shifted conditions grew rapidly but showed the greatest sensitivity to temperature stress, with rapid loss of viability and photosynthetic efficiency. In contrast, slow-growing cultures acclimated to native-like conditions exhibited significantly greater resilience to temperature stress. C_LIO_LIOur work is the first to directly link light and salinity acclimation with temperature resilience in psychrophilic algae, suggesting that fast-growing polar green algae may be particularly vulnerable to increasingly frequent heat waves, with major implications for primary productivity in polar environments. C_LI

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Ecogenomics of transcontinental black spruce: identification of climate adaptation genes across the Canadian boreal landscape

Quevillon, V.; Gerardi, S.; Lenz, P. R.; Bousquet, J.

2026-03-30 plant biology 10.64898/2026.03.26.714629 medRxiv
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Black spruce (Picea mariana [Mill.] B.S.P.) is an emblematic and ubiquitous species of the North Americas boreal forest. While conifer breeding programs have traditionally focused on growth and wood property traits, the study of climate adaptation traits is becoming increasingly prevalent, given the predicted impact of climate change on North Americas boreal zone. Through this study, we aimed to identify genes associated with climate adaptation in black spruce across Canada. A total of 254 black spruce trees from 30 populations, covering most of the species distribution range, were sampled and genotyped for SNPs located in [~]5000 gene loci. Uni- and multivariate Genotype-Environment Association (GEA) approaches, namely LFMM and RDA, as well as an outlier method based on population differentiation (FST) were used to identify genes significantly associated with climatic factors. As such, a total of 77 genes carrying significant candidate SNPs were identified, among which 14 candidates were corroborated by at least two methods. Many of these gene SNPs were also confirmed at a smaller geographic scale, across west - east partitions corresponding to the two main black spruce historical lineages. Notably, significant gene SNPs were more frequently associated to moisture/aridity factors in the western part of the range, and more to temperature factors in the eastern part. The genes carrying these SNPs were also frequently associated to abiotic and biotic stress response. In the context of rapid climate change in the Canadian boreal forest, the results obtained within the framework of this study should support implementing gene conservation efforts while assisting prediction in black spruce breeding programs, which are instrumental to producing adapted planting stock for the large-scale reforestation efforts conducted annually across the Canadian boreal forest.

18
Complementary evidence from historical and contemporary gene dispersal reveals contrasting population dynamics in a tropical tree species

Bonnier, J.; Heuertz, M.; Traissac, S.; Brunaux, O.; Lepais, O.; Troispoux, V.; Chancerel, E.; Compagnie, Z.; Tysklind, N.

2026-03-25 ecology 10.64898/2026.03.23.713184 medRxiv
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Gene flow shapes the demographic stability and evolutionary potential of tropical forest trees, yet its dynamics may differ depending on the temporal scale at which it is assessed. We combined spatial genetic structure (SGS), parentage analyses, and reproductive success metrics to investigate historical and contemporary gene dispersal in four populations of Dicorynia guianensis across French Guiana, encompassing sites differing in environment and management history. A total of 1,528 individuals were genotyped using 66 nuclear and 23 plastid microsatellite markers, enabling high-resolution inference of biparental and maternal gene dispersal. Historical mating and dispersal parameters inferred from SGS revealed marked contrasts among populations. Some populations exhibited high historical gene dispersal distances and weak spatial genetic structure, whereas others showed stronger SGS and long-term aggregative dispersal patterns. Contemporary parentage analyses further highlighted differences in seed and pollen dispersal distances, parent assignment rates, and reproductive skew. In certain populations, pronounced reproductive inequality and reduced effective connectivity were observed, while others displayed more balanced reproductive contributions. By jointly evaluating long-term dispersal legacies and present-day reproductive patterns, our study demonstrates the value of combining indirect and direct genetic approaches to assess population dynamics and conservation status in tropical forest trees. This multi-temporal perspective provides a comprehensive basis for long-term monitoring and sustainable management in heterogeneous tropical landscapes.

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Hydroxycinnamic acid amides emerge as multifunctional molecules involved in regeneration and volatile signalling during wound responses in tomato

Grech Hernandez, C.; Andrade Cardenas, C. E.; Vera Sirera, F. J.; Rodrigo Bravo, I.; Belles Albert, J. M.; Lopez Gresa, M. P.; Lison Parraga, M. P.

2026-03-23 plant biology 10.64898/2026.03.20.713112 medRxiv
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O_LIHydroxycinnamic acid amides (HCAAs) are phenylpropanoid-derived metabolites with known antimicrobial and structural roles in plant defence against pathogens. However, their contribution to mechanical wound responses remains unclear, especially in terms of tissue regeneration and signalling. C_LIO_LIHere, we used tomato transgenic plants overexpressing the tyramine hydroxycinnamoyl transferase (THT), the key biosynthetic enzyme for HCAA production, to investigate the role of HCAAs in wound-induced responses, combining targeted metabolite profiling, gene expression, confocal microscopy, antioxidant assays, and volatile analyses. C_LIO_LIWe show that THT overexpression enhances wound-induced accumulation of HCAAs, promoting vascular lignification, suberization, callose deposition, and increased regeneration capacity. Additionally, 35S::THT plants display a distinct VOC profile that modulates defence gene expression in neighbouring wild-type plants, even in the absence of injury. C_LIO_LIThese results identify THT as a key regulator of structural reinforcement and defence priming after mechanical damage. Our findings highlight a novel role for HCAAs in wound healing and interplant signalling, with potential applications for improving crop resilience to mechanical stress. C_LI

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FennoTraits: Dataset of plant functional traits and community composition in northern European flora

Niittynen, P.; Kemppinen, J.

2026-04-09 plant biology 10.64898/2026.04.07.716889 medRxiv
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We present here FennoTraits, which is a dataset of plant functional trait and community composition data which we collected from Fennoscandia across northern Finland, Norway, and Sweden in 2016-2025. This dataset has 42 049 abundance estimations and 155 794 functional trait observations from 10 traits representing 373 vascular plant species collected from 1 235 study sites within seven study areas. The trait measurements consist of size-structural, leaf economic, leaf spectral, and reproductive traits. The species represent the majority of the native vascular plant species that occur at the seven study areas, and many of the species occur in all seven areas across the two biomes and their ecotone: tundra and boreal forests. Each study area has distinct characteristics and a range of habitats: tundra, meadows, wetlands, shrublands, and boreal forests. These areas are under low anthropogenic influence, and many of the sites are within protected areas that are reserved for nature conservation and scientific research. Finally, we provide with this dataset a general description of the main trait patterns and profiles of the northern European flora.